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Animal Disease Research and Diagnostic Laboratory

Joy Scaria

Scaria photo

Title

Adjunct Faculty

Office Building

Animal Disease Research and Diagnostic Laboratory

Office

117

Mailing Address

Animal Disease Research 117
Veterinary & Biomedical Sciences-Box 2175
University Station
Brookings, SD 57007

Education

  • Ph.D. | BITS, Pilani, India
  • Postdoctoral | Cornell University

Academic Interests

  • Bacterial genomics
  • Gut health
  • Food safety

Academic Responsibilities

Dr. Scaria conducts research in the areas of enteric diseases, role of prebiotics and probiotics in gut health and the development of next generation sequencing (NGS) based diagnostic tools for pathogen detection. His primary research interest is to understand the mechanisms by which commensal gut bacteria provide colonization resistance against pathogens such as clostridium difficile and salmonella enterica. Current research efforts also includes transnational studies to control enteric infections using prebiotics and probiotics. A secondary focus of his research is the use of NGS for foodborne pathogen tracking and detection.

Publications

Peer Reviewed Publications (* indicates corresponding author)

  1. Western and non-western gut microbiomes reveal new roles of Prevotella in carbohydrate metabolism and mouth–gut axis. Prasoodanan P. K. V., Sharma A.K., Mahajan S., Dhakan D.B., Maji A., Scaria J., Sharma V.K. NPJ Biofilms Microbiomes. 2021 Oct 7;7(1):77. DOI:10.1038/s41522-021-00248-x. PMID: 34620880
  2. Rice Bran and Quercetin Produce a Positive Synergistic Effect on Human Gut Microbiota, Elevate the Level of Propionate, and Reduce the Population of Enterobacteriaceae family when Determined using a Bioreactor Model. Ghimire, S.; Wongkuna, S.; Sankaranarayanan, R.; Ryan, E.P.; Bhat, G.J.; and Scaria J.*. Frontiers in Microbiology Sept. 30, 2021;12:751225. DOI:10.3389/fmicb.2021.751225. eCollection 2021. PMID: 34659185
  3. Analysis of 56,348 Genomes Identifies the Relationship between Antibiotic and Metal Resistance and the Spread of Multidrug-Resistant Non-Typhoidal Salmonella. Fenske G.J., Scaria J. Microorganisms. July 9, 2021;9(7):1468. DOI:10.3390/microorganisms9071468. PMID: 34361911
  4. Screening of Human Gut Bacterial Culture Collection Identifies Species That Biotransform Quercetin into Metabolites with Anticancer Properties. Sankaranarayanan R., Sekhon P,K., Ambat A., Nelson J., Jose D., Bhat G.J., Scaria J. International Journal of Molecular Sciences June 30, 2021;22(13):7045. DOI:10.3390/ijms22137045. PMID: 34208885  
  5. Description of Collinsella avium sp. nov., a new member of the Collinsella genus isolated from the ceacum of feral chicken. Wongkuna S., Ghimire S., Chankhamhaengdecha S., Janvilisri T., Scaria J. New Microbes New Infect. 2021 May 18;42:100902. DOI:10.1016/j.nmni.2021.100902. eCollection July 2021 PMID: 34168883
  6. Growth performance and gut health of Escherichia coli-challenged weaned pigs fed canola meal-containing diet. Hong J., Ariyibi S., Antony L., Scaria J., Dilberger-Lawson S., Francis D., Woyengo T.A. Journal of Animal Science Aug. 1, 2021;99(8):skab196. DOI:10.1093/jas/skab196. PMID: 34159354
  7. Mediterraneibacter catenae SW178 sp. nov., an intestinal bacterium of feral chicken. Wongkuna S., Ghimire S., Chankhamhaengdecha S., Janvilisri T., Scaria J. Peer J. April 27, 2021;9:e11050. DOI:10.7717/peerj.11050. eCollection 2021. PMID: 33986975
  8. Genomics accurately predicts antimicrobial resistance in Staphylococcus pseudintermedius collected as part of Vet-LIRN resistance monitoring. Tyson G.H., Ceric O., Guag J., Nemser S., Borenstein S., Slavic D., Lippert S., McDowell R., Krishnamurthy A., Korosec S., Friday C., Pople N., Saab M.E., Fairbrother J.H., Janelle I., McMillan D., Bommineni Y.R., Simon D., Mohan S., Sanchez S., Phillips A., Bartlett P., Naikare H., Watson C., Sahin O., Stinman C., Wang L., Maddox C., DeShambo V., Hendrix K., Lubelski D., Burklund A., Lubbers B., Reed D., Jenkins T., Erol E., Patel M., Locke S., Fortner J., Peak L., Balasuriya U., Mani R., Kettler N., Olsen K., Zhang S., Shen Z., Landinez M.P., Thornton J.K., Thachil A., Byrd M., Jacob M., Krogh D., Webb B., Schaan L., Patil A., Dasgupta S., Mann S., Goodman L.B., Franklin-Guild R.J., Anderson R.R., Mitchell P.K., Cronk B.D., Aprea M., Cui J., Jurkovic D., Prarat M., Zhang Y., Shiplett K., Campos D.D., Rubio J.V.B., Ramanchandran A., Talent S., Tewari D., Thirumalapura N., Kelly D., Barnhart D., Hall L., Rankin S., Dietrich J., Cole S., Scaria J., Antony L., Lawhon S.D., Wu J., McCoy C., Dietz K., Wolking R., Alexander T., Burbick C., Reimschuessel R. Vet Microbiol. 2021 Mar;254:109006. DOI:10.1016/j.vetmic.2021.109006. Epub Feb. 4, 2021. PMID: 33581494
  9. Characterization of bovine ileal epithelial cell line for lectin binding, susceptibility to enteric pathogens, and TLR mediated immune responses. Katwal P., Uprety T., Okda F., Antony L., Thomas M., Chase C., Diel D.G., Nelson E., Young A., Li F., Scaria J., Kaushik R.S. Comparative Immunology, Microbiology and Infectious Diseases Feb. 2021;74:101581. DOI:10.1016/j.cimid.2020.101581. Epub Nov. 17, 2020. PMID: 33260019
  10. Growth Performance, Fecal Score and Blood Immune Parameters of Nursery Pigs Challenged with Escherichia coli F18 Fed Canola Meal-based Diet. J. Hong, S. Ariyibi, J. Scaria, S. Dilberger-Lawson, D. Francis, T.A. Woyengo. Journal of Animal Science, Volume 99, Issue Supplement_1, May 2021, Page 98. DOI:10.1093/jas/skab054.156
  11. Population structure of Salmonella enterica serotype Mbandaka reveals similar virulence potential irrespective of source and phylogenomic stratification. Antony L., Fenske G., Kaushik R.S., Nagaraja T.G., Thomas M., Scaria J. F1000 Res. Sept. 16, 2020;9:1142. DOI:10.12688/f1000research.25540.1. eCollection 2020. PMID: 33214877
  12. How do we find the source of Foodborne superbug outbreaks? Scaria J., Menon S. and Rovai M.  Frontiers for Young Minds 2021. 9:557762 DOI:10.3389/frym.2021.557762
  13. Canola meal in nursery pig diets: growth performance and gut health. Hong J., Ndou S.P., Adams S., Scaria J., Woyengo T.A. Journal of Animal Science Nov. 1, 2020;98(11):skaa338. DOI:10.1093/jas/skaa338. PMID: 33098648
  14. Description of a new member of the family Erysipelotrichaceae: Clostridium fusiformis sp. nov., isolated from healthy human feces. Ghimire S., Wongkuna S. and Scaria J. * PeerJ 8:e10071
  15. Population genomic analysis of Mycoplasma bovis isolates reveals transcontinental variations and potential virulence genes. Kumar, R.; Register, K.; Hennings, J.; Moroni, P.; Gioa, G.; Garcia-Fernandez, N.; Nelson, J.; Jelinski, M.; Lysnyansky, I.; Bayles, D.; and Scaria J.* Microorganisms 2020, 8(10), DOI:10.1101/2020.08.19.257345
  16. Antibiotic-Resistant Escherichia Coli and Sequence Type 131 in Fecal Colonization in Dogs in Taiwan. Chen, J.; Huang, H.; Chang, S.; Scaria, J.; Chiu, Y.L.; Chen, C.M.; Ko, W.C.; Wang, J.L.; Microorganisms. 2020, 8(9), 1439; DOI:10.3390/microorganisms8091439 - Sept. 20, 2020
  17. Small Molecule Adjuvants Potentiate Colistin Activity and Attenuate Resistance Development in Escherichia coli by Affecting pmr AB System. Kathayat D., Antony L., Deblais L., Helmy Y.A., Scaria J., Rajashekara G. Infect Drug Resist. 2020 Jul 10;13:2205-2222. DOI:10.2147/IDR.S260766. eCollection 2020. PMID: 32764996
  18. Identifying Clostridioides difficile-inhibiting gut commensals using culturomics, phenotyping, and combinatorial community assembly. Ghimire S., Roy C., Wongkuna S., Antony L., Fenske G., Maji A., Keena MC, Foley A, and Scaria J*. mSystems. 2020 Feb 4;5(1):e00620-19. DOI:10.1128/mSystems.00620-19. PMID: 32019832
  19. The Gut Microbiota composition of Feral and Tamworth Pigs determined using High-Throughput Culturomics and Metagenomics Reveals Compositional Variations When Compared to the Commercial Breeds. Fenske G., Ghimire S., Antony L., Christopher-Hennings J., and Scaria J.* FEMS Microbiology Ecology March 1, 2020;96(3):fiaa022. DOI:10.1093/femsec/fiaa022. PMID: 32031212
  20. Genome sequence and description of Blautia brookingsii str SG772 nov., a new species of anaerobic bacterium isolated from healthy human gut. Ghimire S., Kumar R., Nelson E.A., Christopher-Hennings J., and Scaria J. * New Microbes and New Infections Jan. 7, 2020;34:100648. DOI:10.1016/j.nmni.2019.100648. eCollection 2020 Mar. PMID: 32055403
  21. Sellimonas caecigallum sp. nov., description and genome sequence of a new member of the Sellimonas genus isolated from the cecum of feral chicken. Wongkuna S., Ghimire S., Antony L., Chankhamhaengdecha S., Janvilisri T., and Scaria J.* New Microbes and New Infections 2019 PMID: 31993203
  22. Association of Flavonifractor plautii, a Flavonoid-Degrading Bacterium, with the Gut Microbiome of Colorectal Cancer Patients in India.  Gupta A., Dhakan D.B., Maji A., Saxena R., Prasoodanan P.K., Mahajan S., Pulikkan J., Kurian J., Gomez A.M., Scaria J., Amato K.R., Sharma A.K., Sharma V.K. mSystems. 2019 4:e00438-19. PMID: 31719139
  23. Geography Shapes the Population Genomics of Salmonella enterica Dublin, Fenske G., Thachil A., McDonough P., Glaser, Scaria J.* Genome Biology and Evolution. July 22, 2019. pii: evz158. DOI:10.1093/gbe/evz158.PMID: 31329231
  24. Amish (rural) versus non-Amish (urban) infant fecal microbiotas are highly diverse and their transplantation lead to differences in mucosal immune maturation in a humanized germfree piglet model. Dhakal, S.; Gourapura R.J.; Wang L.; Antony L.; Rank J.; Bernardo P.; Ghimire S.; Bondra K.; Siems C.; Lakshmanappa Y.S.; Sankar R., Hogshead B., Krakowka S., Kauffman M., Scaria J., LeJeune J., Zhongtang Y. Frontiers in Immunology, 10,1509,2019 PMID: 31379808
  25. Gut Microbial Dynamics during Conventionalization of Germfree Chicken.  "Thomas, M.; Wongkuna, S.; Ghimire S.; Kumar R.; Antony L.; Doerner K.C.; Singery A.; Nelson E.; Woyengo T.; Chankhamhaengdecha S., Janvilisri T., Scaria J.* mSphere, 2019 4,2,e00035-19, PMID: 30918057
  26. Enhancing the one health initiative by using whole genome sequencing to monitor antimicrobial resistance of animal pathogens: Vet-LIRN collaborative project with veterinary diagnostic laboratories in United States and Canada, Ceric, O.; Tyson G.H.; Goodman L.B.; Mitchell P.K.; Zhang Y.; Prarat M.; Cui J.; Peak L.; Scaria J.; Antony L. et al ",BMC veterinary research,15,1,130, 2019, PMID: 31060608
  27. Alternative Therapeutic Approaches For Multidrug Resistant Clostridium difficile. Janvilisri Tavan; Sorg J.; Scaria J.; Sadowsky M.J. Frontiers in Microbiology,10,1216,2019, PMID: 31214150
  28. Salmonella Typhimurium strain and tomato genotypes affect the persistence of Salmonella in tomato plants. Deblais L., Scaria J., Antony L., Vrisman C., Helmy Y. and Miller S.A. PHYTOPATHOLOGY, Vol 109, P186, 2019
  29. The Flavonoid Metabolite 2, 4, 6-Trihydroxybenzoic Acid Is a CDK Inhibitor and an Anti-Proliferative Agent: A Potential Role in Cancer Prevention", Sankaranarayanan R.; Valiveti C.K.; Kumar D.R.; Kesharwani S.S.; Seefeldt T.; Scaria J.; Tummala H.; Bhat G.J. Cancers,11,3,427, 2019, PMID: 30917530
  30. Diagnostic tests, test performance, and considerations for interpretation. Christopher‐Hennings J.; Erickson G.A.; Hesse R.A.; Nelson E.A.; Rossow S.; Scaria J.; Slavic D. Diseases of Swine. 75-97, 2019,"John Wiley and Sons
  31. Salmonella Prevalence in Lymph Nodes of Sows and Market Hogs in the United States. Bessire B.C.; Thomas M.; Gehring K.B.; Savell J.W.; Griffin D.B.; Taylor T.M.; Mikel W.B.; Campbell J.A.; Arnold A.N.; Scaria J. Meat and Muscle Biology, 2019 2,2,129-130
  32. Effects of health-related claims on millennials’ willingness to pay for probiotics in the US: Implications for regulation. Kolady D.E., Kattelmann K., Scaria J. Journal of Functional Foods 60, 103434, 2019
  33. Antimicrobial-Resistant Escherichia coli from Environmental Waters in Northern Colorado. Haberecht, Hannah B.; Nealon, Nora Jean; Gilliland, Jake R.; Holder, Amethyst V.; Runyan, Connor; Oppel, Renee C.; Ibrahim, Hend M.; Mueller, Link; Schrupp, Forrest; Vilchez, Samuel; Antony L., Scaria J., Ryan E.P. J Environ Public Health. 2019 Feb 18;2019:3862949  PMID : 30906330
  34. The unique composition of Indian gut microbiome, gene catalogue, and associated fecal metabolome deciphered using multi-omics approaches. Dhakan, D.B.; Maji, A.; Sharma, A.K.; Saxena, R.; Pulikkan, J.; Grace, T.; Gomez, A.; Scaria, J.; Amato, K.R.; Sharma, V.K.; GigaScience. 2019 March 1;8(3) 2019 PMID: 30698687
  35. Genome divergence and increased virulence of outbreak associated Salmonella enterica subspecies enterica serovar Heidelberg. Antony L., Behr M., Sockett D., Miskimins D., Aulik N., Christopher-Hennings J., Nelson E., Allard M.W., Scaria J*. Gut Pathog. 2018 Dec 24;10:53. DOI:10.1186/s13099-018-0279-0. eCollection 2018. PMID: 30603048
  36. Draft Genome Sequences of Salmonella enterica subsp. enterica Serotype Heidelberg from Chicken and Turkey Farm Environments. Deblais L., Scaria J., Rajashekara G. Microbiology Resource Announcements 2018 Nov. 21;7(20). pii: e01204-18. DOI:10.1128/MRA.01204-18. eCollection 2018 Nov. PMID: 30533829
  37. Comparative Genomic Studies of Salmonella Heidelberg Isolated From Chicken- and Turkey-Associated Farm Environmental Samples. Deblais L., Lorentz B., Scaria J., Nagaraja K.V., Nisar M., Lauer D., Voss S., Rajashekara G. Front Microbiol. 2018 Aug 10;9:1841. DOI:10.3389/fmicb.2018.01841. eCollection 2018. PMID: 30147682
  38. Genotypic and Phenotypic Characterization of Salmonella Isolated from Fresh Ground Meats Obtained from Retail Grocery Stores in the Brookings, South Dakota, Area. Erickson A.K., Murray D.L., Ruesch L.A., Thomas M., Lau Z., Scaria J. J Food Prot. 2018 Sept.;81(9):1526-1534. DOI:10.4315/0362-028X.JFP-18-076. PMID: 30118346
  39. Metagenomic characterization of the effect of feed additives on the gut microbiome and antibiotic resistome of feedlot cattle. Thomas M., Webb M., Ghimire S., Blair A., Olson K., Fenske G.J., Fonder A.T., Christopher-Hennings J., Brake D., Scaria J.* Sci Rep. 2017 Sept. 25;7(1):12257. DOI:10.1038/s41598-017-12481-6. PMID: 28947833
  40. Whole genome sequencing-based detection of antimicrobial resistance and virulence in non-typhoidal Salmonella enterica isolated from wildlife. Thomas M., Fenske G.J., Antony L., Ghimire S., Welsh R., Ramachandran A., Scaria J.* Gut Pathog. 2017 Nov 21;9:66. DOI:10.1186/s13099-017-0213-x. eCollection 2017.PMID: 29201148
  41. Gudlavalleti, R. H., Bose, S. C., Verma, S. K., Khatri, P., Scaria, J., Dhewa, S., Chaubey, V. K. A Novel Fluorometric Bio-Sensing-Based Arsenic Detection System for Groundwater. IEEE Sensors Journal, (2017) (17), 5391-5398.
  42. Palanisamy S., Chang Y.C., Scaria J., Penha R.A., Peters K.E., Mohammed H.O. Genetic relatedness among STEC isolated along the animal food supply chain and in gastroenteritis cases in Qatar using multilocus sequence typing (MLST), Foodborne Pathogens and Disease. 2017 June;14(6):318-325. DOI:10.1089/fpd.2016.2209. PMID: 28358583
  43. Draft genome sequences of 37 Salmonella enterica strains isolated from poultry sources in Nigeria. Useh N.M., Ngbede E.O., Akange N., Thomas M.,Foley A., Keena M., Nelson E.A., Christopher-Hennings J., Tomita M., Suzuki H. and Scaria J.* GenomeA, 2016 May 5;4(3). pii: e00315-16.PMID: 27151793
  44. Genome Sequences of Salmonella enterica subsp. enterica Serovar Lubbock Isolated from Liver Abscesses of Feedlot Cattle, Amachawadi R.G., Thomas M., Nagaraja T.G. and Scaria J.* GenomeA. 2016 May 5;4(3). pii: e00319-16 PMID: 27151794
  45. Draft Genome Sequences of Three Flavobacterium psychrophilum Strains Isolated from Coldwater Disease Outbreaks at Three Production Hatcheries. Neiger R., Thomas M., Das S.,  Barnes M., Fletcher B., Snekvik K., Thompson J., Scaria J.* GenomeA. 2016 March 10;4(2). pii: e00035-16 PMID: 26966210
  46. Chang Y.C., Scaria J., Ibraham M., Doiphode S., Chang Y.F., Sultan A., Mohammed H.O. (2015) Distribution and factors associated with Salmonella enterica genotypes in a diverse population of humans and animals in Qatar using multi-locus sequence typing (MLST). Journal of Infection and Public Health. 2015 Nov. 26. pii: S1876-0341(15)00196-3. DOI:10.1016/j.jiph.2015.10.013 PMID: 26631436
  47. Scaria J., Suzuki H., Ptak C.P., Chen J.W., Zhu Y., Guo X.K., Chang Y.F.(2015) Comparative genomic and phenomic analysis of Clostridium difficile and Clostridium sordellii, two related pathogens with differing host tissue preference. BMC Genomics. 2015 June 10;16:448. DOI:10.1186/s12864-015-1663-5. PMID: 26059449
  48. Clement T., Kutish G.F., Nezworski J., Scaria J., Nelson E., Christopher-Hennings J., Diel D.G. (2015) Complete Genome Sequence of a Highly Pathogenic Avian Influenza Virus (H5N2) Associated with an Outbreak in Commercial Chickens, Iowa, USA, 2015. GenomeA . 2015 June 11;3(3). pii: e00613-15. DOI:10.1128/genomeA.00613-15. PMID: 26067961
  49. Janvilisri T., Suzuki H., Scaria J., Chen J.W., Charoensawan V. (2015) High-Throughput Screening for Biomarker Discovery. Dis Markers. 2015:108064. DOI:10.1155/2015/108064. PMID: 26060333
  50. Scaria J., Mao C., Chen J.W., Sobral B., Chang Y.F. (2013) Differential Stress Transcriptome Landscape of Historic and Recently Emerged Hypervirulent Strains of Clostridium difficile Strains Determined Using RNA-seq. PLoS One. 2013 Nov 7;8(11):e78489. DOI:10.1371/journal.pone.0078489 PMID: 24244315.
  51. Janvilisri T., Bhunia A.K., Scaria J.(2013) Advances in molecular diagnostics. BioMed Research International. 2013:172521. DOI:10.1155/2013/172521. Epub 2013 May 27 PMID: 23781497.
  52. Chen J.W., Scaria J., Mao C., Sobral B., Zhang S., Lawley T.D., Chang Y.F. (2012) Proteomic comparison of historic and recently emerged hypervirulent Clostridium difficile strains. Journal of Proteome Research 2013 March 1;12(3):1151-61 PMID: 23298230
  53. Janvilisri T., Scaria J., Teng C.H., McDonough S.P., Gleed R.D., Fubini S.L., Zhang S., Akey B., Chang Y.F. (2012) Temporal differential proteomes of Clostridium difficile in the pig ileal-ligated loop model. PLoS One. 2012;7(9):e45608. PMID: 23029131
  54. Chen J.W., Scaria J., Chang Y.F. (2012) Transcriptomic and phenotypic response of auxotrophic Mycobacterium avium subspecies paratuberculosis (MAP) leuD mutant under environmental stresses. PLoS One. 2012;7(6):e37884. PMID:22675497
  55. Chen J.W., Faisal S.M., Chandra S., McDonough S.P., Moreira M.A., Scaria J., Chang C.F., Bannantine J.P., Akey B., Chang Y.F. (2011) Immunogenicity and protective efficacy of the Mycobacterium avium subsp. paratuberculosis attenuated mutants against challenge in a mouse model. Vaccine. 2011 Nov. 18. PMID: 22107851
  56. Mao B.H., Chang Y.F., Scaria J., Chang C.C., Chou L.W., Tien N., Wu J.J., Tseng C.C., Wang M.C., Chang C.C., Hsu Y.M., Teng C.H. (2011) Identification of Escherichia coli genes associated with urinary tract infections. Journal of Clinical Microbiology 2011 Nov. 9. PMID:22075599
  57. Scaria J., Janvilisri T., Fubini S., Gleed R.D., McDonough S.P., Chang YF.. (2010) Clostridium difficile transcriptome analysis using pig ligated loop model reveals modulation of pathways not modulated in vitro. Journal of the Infectious Diseases.1;203(11):1613-20.PMID:21592991
  58. Rajkhowa S., Scaria J., Garcia D.L., Musser K.A., Akey B.L., Chang Y.F. (2010) Analysis of Escherichia coli O157 clinical isolates by multilocus sequence typing. BMC Res Notes. 21;3:343.PMID:21176142
  59. Scaria J., Ponnala L., Janvilisri T., Yan W., Mueller L.A., Chang Y.F. (2010) Analysis of ultra low genome conservation in Clostridium difficile. PLoS One.8;5(12):e15147. PMID: 21170335
  60. Janvilisri T., Scaria J., Chang Y.F. (2010) Transcriptional profiling of Clostridium difficile and Caco-2 cells during infection. Journal of the Infectious Diseases. 202(2):282-90.PMID: 20521945
  61. Scaria J., Warnick L.D., Kaneene J.B., May K., Teng C.H., Chang Y.F. (2010) Comparison of phenotypic and genotypic antimicrobial profiles in Escherichia coli and Salmonella enterica from the same dairy cattle farms. Molecular and Cellular Probes. 24(6):325-45. PMID:20688154
  62. Janvilisri T., Scaria J., Chang Y.F. (2010) Transcriptional profiling of Clostridium difficile and Caco-2 cells during infection.  Journal of the Infectious Diseases. 202(2):282-90.PMID: 20521945
  63. Janvilisri T., Scaria J., Gleed R., Fubini S., Bonkosky M.M., Gröhn Y.T., Chang Y.F. (2010) Development of a microarray for identification of pathogenic Clostridium spp. Diagnostic Microbiology and Infectious Disease. 66(2):140-7. PMID:19879710
  64. Janvilisri T., Scaria J., Thompson A.D., Nicholson A., Limbago B.M., Arroyo L.G., Songer J.G., Gröhn Y.T., Chang Y.F. (2009) Microarray identification of Clostridium difficile core components and divergent regions associated with host origin. Journal of Bacteriology 191(12):3881-91. PMID:19376880
  65. Scaria J., Ramachandran S., Jain P.K. and Verma S.K. (2009) Construction and testing of EGFP based bacterial biosensor for the detection of residual tetracycline in milk and water. R. Journal of Microbiology, 4(3): 104-111.
  66. Scaria J., Sreedharan A., Chang Y.F. (2008) Microbial Diagnostic Array Workstation (MDAW): a web server for diagnostic array data storage, sharing and analysis. Source Code Biology and Medic 2008 Sept. 23;3:14.PMID:18811969
  67. Scaria J., Palaniappan R.U., Chiu D., Phan J.A., Ponnala L., McDonough P., Grohn Y.T., Porwollik S., McClelland M., Chiou C.S., Chu C., Chang Y.F. (2008) Microarray for molecular typing of Salmonella enterica serovars. Mol Cell Probes. 22(4):238-43.PMID:18554865
  68. Scaria J., Chandramouli U., Verma S.K. (2005) Antibiotic Resistance Genes Online (ARGO): a Database on vancomycin and beta-lactam resistance genes. Bioinformation. 1(1):5-7. PMID: 17597841
  69. Raveender V., Scaria J. and Verma S.K. (2004) Bioaccumulation and Biosorption of heavy metals by Spirulina Platensis. International Journal of Biodeterioration and Biodegradation, 53(4): 229
  70. Raveender V., Scaria J., Verma S.K. (2002) Application of mutant strains of Cyanobacteria for Cd(2+) removal. Bulletin of Environmental Contamination and Toxicology. 69(5):632-7.PMID:12375109 

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